Loop J4_8P4V

3D structure

PDB id: 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description: 80S yeast ribosome in complex with HaterumaimideQ
Experimental method: X-RAY DIFFRACTION
Resolution: 3.16 Å

Loop

Sequence: CUUGU*AAAUAACGAUACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAG*CGAGGAACAAU*AUAG
Length: 64 nucleotides
Bulged bases: 8P4V|1|A|C|495, 8P4V|1|A|A|506, 8P4V|1|A|A|541, 8P4V|1|A|A|544
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8P4V|1|A|C|31
8P4V|1|A|U|32
8P4V|1|A|U|33
8P4V|1|A|G|34
8P4V|1|A|U|35
*
8P4V|1|A|A|473
8P4V|1|A|A|474
8P4V|1|A|A|475
8P4V|1|A|U|476
8P4V|1|A|A|477
8P4V|1|A|A|478
8P4V|1|A|C|479
8P4V|1|A|G|480
8P4V|1|A|A|481
8P4V|1|A|U|482
8P4V|1|A|A|483
8P4V|1|A|C|484
8P4V|1|A|A|485
8P4V|1|A|G|486
8P4V|1|A|G|487
8P4V|1|A|G|488
8P4V|1|A|C|489
8P4V|1|A|C|490
8P4V|1|A|C|491
8P4V|1|A|A|492
8P4V|1|A|U|493
8P4V|1|A|U|494
8P4V|1|A|C|495
8P4V|1|A|G|496
8P4V|1|A|G|497
8P4V|1|A|G|498
8P4V|1|A|U|499
8P4V|1|A|C|500
8P4V|1|A|U|501
8P4V|1|A|U|502
8P4V|1|A|G|503
8P4V|1|A|U|504
8P4V|1|A|A|505
8P4V|1|A|A|506
8P4V|1|A|U|507
8P4V|1|A|U|508
8P4V|1|A|G|509
8P4V|1|A|G|510
8P4V|1|A|A|511
8P4V|1|A|A|512
8P4V|1|A|U|513
8P4V|1|A|G|514
8P4V|1|A|A|515
8P4V|1|A|G|516
*
8P4V|1|A|C|536
8P4V|1|A|G|537
8P4V|1|A|A|538
8P4V|1|A|G|539
8P4V|1|A|G|540
8P4V|1|A|A|541
8P4V|1|A|A|542
8P4V|1|A|C|543
8P4V|1|A|A|544
8P4V|1|A|A|545
8P4V|1|A|U|546
*
8P4V|1|A|A|592
8P4V|1|A|U|593
8P4V|1|A|A|594
8P4V|1|A|G|595

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain K: 40S ribosomal protein S9-A
Chain Y: 40S ribosomal protein S23-A
Chain Z: 40S ribosomal protein S24-A
Chain f: 40S ribosomal protein S30-A

J4_8P4V_010