J4_8P8M_002
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P8M_002 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.1268
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_43318.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P8M|1|A|C|185
8P8M|1|A|U|186
8P8M|1|A|A|187
8P8M|1|A|U|188
8P8M|1|A|G|189
*
8P8M|1|A|C|205
8P8M|1|A|G|206
8P8M|1|A|U|207
8P8M|1|A|C|208
*
8P8M|1|A|G|212
8P8M|1|A|A|213
8P8M|1|A|G|214
*
8P8M|1|A|C|226
8P8M|1|A|G|227
8P8M|1|A|U|228
8P8M|1|A|G|229
8P8M|1|A|U|230
8P8M|1|A|G|231
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- 60S ribosomal protein L4-A
- Chain QY
- 60S ribosomal protein L26-A
Coloring options: