J4_8P8M_003
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8P8M|1|A|A|1452, 8P8M|1|A|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8P8M_003 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.0852
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P8M|1|A|C|1451
8P8M|1|A|A|1452
8P8M|1|A|A|1453
8P8M|1|A|A|1454
8P8M|1|A|U|1455
8P8M|1|A|A|1456
8P8M|1|A|U|1457
*
8P8M|1|A|A|1475
8P8M|1|A|G|1476
*
8P8M|1|A|U|1877
8P8M|1|A|G|1878
8P8M|1|A|A|1879
8P8M|1|A|U|1880
*
8P8M|1|A|A|2352
8P8M|1|A|G|2353
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain QO
- 60S ribosomal protein L17-A
- Chain QQ
- 60S ribosomal protein L19-A
- Chain RD
- 60S ribosomal protein L31-A
Coloring options: