J4_8P8N_006

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8P8N_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0643

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

8P8N|1|A|G|2130
8P8N|1|A|A|2131
8P8N|1|A|C|2132
8P8N|1|A|U|2133
8P8N|1|A|G|2134
*
8P8N|1|A|C|2146
8P8N|1|A|A|2147
8P8N|1|A|U|2148
8P8N|1|A|A|2149
8P8N|1|A|G|2150
*
8P8N|1|A|U|2186
8P8N|1|A|G|2187
8P8N|1|A|A|2188
8P8N|1|A|U|2189
8P8N|1|A|U|2190
*
8P8N|1|A|A|2317
8P8N|1|A|U|2318
8P8N|1|A|U|2319
8P8N|1|A|A|2320
8P8N|1|A|A|2321
8P8N|1|A|C|2322

Current chains

Chain A

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L2-A

Chain RT

60S ribosomal protein L43-A