J4_8PEG_001

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8PEG|1|7|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PEG_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1374

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8PEG|1|7|C|268
8PEG|1|7|C|269
*
8PEG|1|7|G|370
8PEG|1|7|A|371
8PEG|1|7|G|372
8PEG|1|7|U|373
8PEG|1|7|A|374
8PEG|1|7|G|375
*
8PEG|1|7|U|399
8PEG|1|7|G|400
8PEG|1|7|A|401
8PEG|1|7|A|402
8PEG|1|7|U|403
8PEG|1|7|A|404
8PEG|1|7|U|405
8PEG|1|7|G|406
*
8PEG|1|7|C|421
8PEG|1|7|A|422
8PEG|1|7|A|423
8PEG|1|7|G|424

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain i

50S ribosomal protein L9