J4_8PEG_012

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8PEG|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PEG_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1968

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8PEG|1|A|G|115
8PEG|1|A|A|116
8PEG|1|A|G|117
8PEG|1|A|U|118
8PEG|1|A|A|119
8PEG|1|A|A|120
8PEG|1|A|U|121
8PEG|1|A|G|122
*
8PEG|1|A|U|239
8PEG|1|A|G|240
*
8PEG|1|A|C|286
8PEG|1|A|U|287
8PEG|1|A|A|288
8PEG|1|A|G|289
*
8PEG|1|A|C|311
8PEG|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

Small ribosomal subunit protein uS17