J4_8PEG_013

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8PEG|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PEG_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1938

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8PEG|1|A|G|142
8PEG|1|A|A|143
8PEG|1|A|G|144
*
8PEG|1|A|C|178
8PEG|1|A|A|179
8PEG|1|A|U|180
8PEG|1|A|A|181
8PEG|1|A|A|182
8PEG|1|A|C|183
8PEG|1|A|G|184
*
8PEG|1|A|C|193
8PEG|1|A|C|194
8PEG|1|A|A|195
8PEG|1|A|A|196
8PEG|1|A|A|197
8PEG|1|A|G|198
*
8PEG|1|A|U|219
8PEG|1|A|G|220
8PEG|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20