J4_8PFR_008

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PFR_008 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0865

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8PFR|1|A|U|3010
8PFR|1|A|A|3011
8PFR|1|A|A|3012
*
8PFR|1|A|U|3042
8PFR|1|A|C|3043
*
8PFR|1|A|G|3098
8PFR|1|A|C|3099
8PFR|1|A|U|3100
*
8PFR|1|A|A|3134
8PFR|1|A|U|3135
8PFR|1|A|G|3136

Current chains

Chain A

25S rRNA

Nearby chains

Chain JW

60S ribosomal protein L16-A

Chain LG

60S ribosomal protein L3

Chain QV

60S ribosomal protein L23-A