3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
8PHJ|1|A|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8PHJ_003 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.1218
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8PHJ|1|A|G|115
8PHJ|1|A|A|116
8PHJ|1|A|G|117
8PHJ|1|A|U|118
8PHJ|1|A|A|119
8PHJ|1|A|A|120
8PHJ|1|A|U|121
8PHJ|1|A|G|122
*
8PHJ|1|A|U|239
8PHJ|1|A|G|240
*
8PHJ|1|A|C|286
8PHJ|1|A|U|287
8PHJ|1|A|A|288
8PHJ|1|A|G|289
*
8PHJ|1|A|C|311
8PHJ|1|A|C|312

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
Small ribosomal subunit protein bS16
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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