J4_8PHJ_004

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8PHJ|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PHJ_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0986

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8PHJ|1|A|G|142
8PHJ|1|A|A|143
8PHJ|1|A|G|144
*
8PHJ|1|A|C|178
8PHJ|1|A|A|179
8PHJ|1|A|U|180
8PHJ|1|A|A|181
8PHJ|1|A|A|182
8PHJ|1|A|C|183
8PHJ|1|A|G|184
*
8PHJ|1|A|C|193
8PHJ|1|A|C|194
8PHJ|1|A|A|195
8PHJ|1|A|A|196
8PHJ|1|A|A|197
8PHJ|1|A|G|198
*
8PHJ|1|A|U|219
8PHJ|1|A|G|220
8PHJ|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20