J4_8PHJ_006

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8PHJ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PHJ_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1236

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8PHJ|1|a|C|268
8PHJ|1|a|C|269
*
8PHJ|1|a|G|370
8PHJ|1|a|A|371
8PHJ|1|a|G|372
8PHJ|1|a|U|373
8PHJ|1|a|A|374
8PHJ|1|a|G|375
*
8PHJ|1|a|U|399
8PHJ|1|a|G|400
8PHJ|1|a|A|401
8PHJ|1|a|A|402
8PHJ|1|a|U|403
8PHJ|1|a|A|404
8PHJ|1|a|U|405
8PHJ|1|a|G|406
*
8PHJ|1|a|C|421
8PHJ|1|a|A|422
8PHJ|1|a|A|423
8PHJ|1|a|G|424

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28