J4_8PJ4_002
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8PJ4|1|A|A|672, 8PJ4|1|A|A|1083, 8PJ4|1|A|C|1085, 8PJ4|1|A|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PJ4_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0824
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8PJ4|1|A|A|671
8PJ4|1|A|A|672
8PJ4|1|A|G|673
*
8PJ4|1|A|C|1032
8PJ4|1|A|G|1033
8PJ4|1|A|A|1034
8PJ4|1|A|A|1035
8PJ4|1|A|A|1036
8PJ4|1|A|G|1037
*
8PJ4|1|A|C|1078
8PJ4|1|A|C|1079
8PJ4|1|A|A|1080
8PJ4|1|A|PSU|1081
8PJ4|1|A|A|1082
8PJ4|1|A|A|1083
8PJ4|1|A|A|1084
8PJ4|1|A|C|1085
8PJ4|1|A|G|1086
8PJ4|1|A|A|1087
8PJ4|1|A|U|1088
8PJ4|1|A|G|1089
*
8PJ4|1|A|U|1160
8PJ4|1|A|U|1161
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 9
- 60S ribosomal protein L41
- Chain B
- 40S ribosomal protein S11
- Chain E
- 40S ribosomal protein S23
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
- Chain P
- 40S ribosomal protein S14
- Chain Q
- 40S ribosomal protein S26
Coloring options: