J4_8PKL_002

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.068

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8PKL|1|7|G|297
8PKL|1|7|G|298
8PKL|1|7|A|299
8PKL|1|7|A|300
8PKL|1|7|G|301
*
8PKL|1|7|C|316
8PKL|1|7|G|317
8PKL|1|7|C|318
8PKL|1|7|G|319
*
8PKL|1|7|C|323
8PKL|1|7|A|324
8PKL|1|7|G|325
*
8PKL|1|7|C|337
8PKL|1|7|G|338
8PKL|1|7|U|339
8PKL|1|7|A|340
8PKL|1|7|C|341

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain x

50S ribosomal protein L24