J4_8PKL_003

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2134

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8PKL|1|7|C|601
8PKL|1|7|A|602
8PKL|1|7|A|603
8PKL|1|7|G|604
*
8PKL|1|7|C|624
8PKL|1|7|G|625
8PKL|1|7|A|626
8PKL|1|7|A|627
8PKL|1|7|G|628
*
8PKL|1|7|C|635
8PKL|1|7|G|636
8PKL|1|7|A|637
8PKL|1|7|G|638
*
8PKL|1|7|C|650
8PKL|1|7|G|651
8PKL|1|7|U|652
8PKL|1|7|U|653
8PKL|1|7|A|654
8PKL|1|7|A|655
8PKL|1|7|G|656

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L35

Chain d

50S ribosomal protein L4

Chain o

50S ribosomal protein L15