J4_8PKL_005

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8PKL|1|7|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0635

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8PKL|1|7|G|1310
8PKL|1|7|G|1311
8PKL|1|7|U|1312
8PKL|1|7|U|1313
8PKL|1|7|C|1314
*
8PKL|1|7|G|1338
8PKL|1|7|G|1339
8PKL|1|7|U|1340
8PKL|1|7|G|1341
8PKL|1|7|A|1342
8PKL|1|7|G|1343
*
8PKL|1|7|C|1404
8PKL|1|7|U|1405
*
8PKL|1|7|A|1597
8PKL|1|7|A|1598
8PKL|1|7|U|1599
8PKL|1|7|C|1600
8PKL|1|7|G|1601
8PKL|1|7|U|1602
8PKL|1|7|A|1603
8PKL|1|7|C|1604

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L34

Chain w

50S ribosomal protein L23