J4_8PKL_009

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8PKL|1|7|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0896

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8PKL|1|7|C|1833
8PKL|1|7|U|1834
8PKL|1|7|2MG|1835
*
8PKL|1|7|C|1905
8PKL|1|7|G|1906
*
8PKL|1|7|C|1924
8PKL|1|7|C|1925
8PKL|1|7|U|1926
8PKL|1|7|A|1927
8PKL|1|7|A|1928
8PKL|1|7|G|1929
8PKL|1|7|G|1930
8PKL|1|7|U|1931
8PKL|1|7|A|1932
8PKL|1|7|G|1933
*
8PKL|1|7|C|1967
8PKL|1|7|G|1968
8PKL|1|7|A|1969
8PKL|1|7|A|1970
8PKL|1|7|U|1971
8PKL|1|7|G|1972

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain W

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2