J4_8PKL_013

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGA*UUGC

Length

21 nucleotides

Bulged bases

8PKL|1|A|C|183, 8PKL|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PKL|1|A|G|142
8PKL|1|A|A|143
8PKL|1|A|G|144
*
8PKL|1|A|C|178
8PKL|1|A|A|179
8PKL|1|A|U|180
8PKL|1|A|A|181
8PKL|1|A|A|182
8PKL|1|A|C|183
8PKL|1|A|G|184
*
8PKL|1|A|C|193
8PKL|1|A|C|194
8PKL|1|A|A|195
8PKL|1|A|A|196
8PKL|1|A|A|197
8PKL|1|A|G|198
8PKL|1|A|A|199
*
8PKL|1|A|U|218
8PKL|1|A|U|219
8PKL|1|A|G|220
8PKL|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20