J4_8PKL_016

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

G(4SU)AG*UAC*GCG(G7M)(3AU)CG*CC

Length

16 nucleotides

Bulged bases

8PKL|1|X|4SU|8, 8PKL|1|X|3AU|48, 8PKL|1|X|C|49

QA status

Modified nucleotides: 4SU, G7M, 3AU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_016 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.2748

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

8PKL|1|X|G|7
8PKL|1|X|4SU|8
8PKL|1|X|A|9
8PKL|1|X|G|10
*
8PKL|1|X|U|26
8PKL|1|X|A|27
8PKL|1|X|C|28
*
8PKL|1|X|G|44
8PKL|1|X|C|45
8PKL|1|X|G|46
8PKL|1|X|G7M|47
8PKL|1|X|3AU|48
8PKL|1|X|C|49
8PKL|1|X|G|50
*
8PKL|1|X|C|66
8PKL|1|X|C|67

Current chains

Chain X

tRNA-Arg (E-site)

Nearby chains

Chain G

30S ribosomal protein S7

Chain g

50S ribosomal protein L33