J4_8PNN_007
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8PNN|1|1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PNN_007 not in the Motif Atlas
- Homologous match to J4_8CRE_007
- Geometric discrepancy: 0.0798
- The information below is about J4_8CRE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_63658.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 1
Unit IDs
8PNN|1|1|C|2192
8PNN|1|1|U|2193
8PNN|1|1|G|2194
*
8PNN|1|1|C|2248
8PNN|1|1|G|2249
*
8PNN|1|1|C|2267
8PNN|1|1|U|2268
8PNN|1|1|U|2269
8PNN|1|1|A|2270
8PNN|1|1|A|2271
8PNN|1|1|G|2272
8PNN|1|1|G|2273
8PNN|1|1|U|2274
8PNN|1|1|A|2275
8PNN|1|1|G|2276
*
8PNN|1|1|U|2310
8PNN|1|1|G|2311
8PNN|1|1|A|2312
8PNN|1|1|A|2313
8PNN|1|1|U|2314
8PNN|1|1|G|2315
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- Large ribosomal subunit protein eL41B
- Chain j
- 60S ribosomal protein L2-A
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