J4_8PNN_012
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8PNN|1|AR|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PNN_012 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.047
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8PNN|1|AR|U|112
8PNN|1|AR|C|113
*
8PNN|1|AR|G|267
8PNN|1|AR|A|268
8PNN|1|AR|G|269
8PNN|1|AR|U|270
8PNN|1|AR|C|271
8PNN|1|AR|G|272
*
8PNN|1|AR|C|293
8PNN|1|AR|U|294
8PNN|1|AR|A|295
8PNN|1|AR|A|296
8PNN|1|AR|G|297
8PNN|1|AR|U|298
8PNN|1|AR|G|299
*
8PNN|1|AR|U|316
8PNN|1|AR|A|317
8PNN|1|AR|A|318
8PNN|1|AR|A|319
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DK
- 60S ribosomal protein L36-A
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