J4_8PNN_013
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PNN_013 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.0377
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PNN|1|AR|C|185
8PNN|1|AR|U|186
8PNN|1|AR|A|187
8PNN|1|AR|U|188
8PNN|1|AR|G|189
*
8PNN|1|AR|C|205
8PNN|1|AR|G|206
8PNN|1|AR|U|207
8PNN|1|AR|C|208
*
8PNN|1|AR|G|212
8PNN|1|AR|A|213
8PNN|1|AR|G|214
*
8PNN|1|AR|C|226
8PNN|1|AR|G|227
8PNN|1|AR|U|228
8PNN|1|AR|G|229
8PNN|1|AR|U|230
8PNN|1|AR|G|231
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CF
- 60S ribosomal protein L4-A
- Chain DA
- 60S ribosomal protein L26-A
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