J4_8PV2_001
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UC*GAGUCG*CAAAAUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8PV2|1|C1|U|291
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8PV2_001 not in the Motif Atlas
- Homologous match to J4_8C3A_001
- Geometric discrepancy: 0.0905
- The information below is about J4_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PV2|1|C1|U|113
8PV2|1|C1|C|114
*
8PV2|1|C1|G|260
8PV2|1|C1|A|261
8PV2|1|C1|G|262
8PV2|1|C1|U|263
8PV2|1|C1|C|264
8PV2|1|C1|G|265
*
8PV2|1|C1|C|286
8PV2|1|C1|A|287
8PV2|1|C1|A|288
8PV2|1|C1|A|289
8PV2|1|C1|A|290
8PV2|1|C1|U|291
8PV2|1|C1|G|292
*
8PV2|1|C1|U|309
8PV2|1|C1|A|310
8PV2|1|C1|A|311
8PV2|1|C1|A|312
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
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