J4_8PV4_004
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGU(OMC)GUAC
- Length
- 21 nucleotides
- Bulged bases
- 8PV4|1|C1|U|1506
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PV4|1|C1|G|1475
8PV4|1|C1|G|1476
8PV4|1|C1|U|1477
8PV4|1|C1|U|1478
8PV4|1|C1|C|1479
*
8PV4|1|C1|G|1503
8PV4|1|C1|G|1504
8PV4|1|C1|U|1505
8PV4|1|C1|U|1506
8PV4|1|C1|A|1507
8PV4|1|C1|G|1508
*
8PV4|1|C1|C|1594
8PV4|1|C1|C|1595
*
8PV4|1|C1|G|1809
8PV4|1|C1|G|1810
8PV4|1|C1|U|1811
8PV4|1|C1|OMC|1812
8PV4|1|C1|G|1813
8PV4|1|C1|U|1814
8PV4|1|C1|A|1815
8PV4|1|C1|C|1816
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CJ
- Pescadillo homolog
- Chain LR
- Ribosomal protein L19
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Lk
- 60S ribosomal protein L38-like protein
- Chain Ll
- Ribosomal protein eL39
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