J4_8PVA_001

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8PVA|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PVA_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.0954

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8PVA|1|A|G|115
8PVA|1|A|A|116
8PVA|1|A|G|117
8PVA|1|A|U|118
8PVA|1|A|A|119
8PVA|1|A|A|120
8PVA|1|A|U|121
8PVA|1|A|G|122
*
8PVA|1|A|U|239
8PVA|1|A|G|240
*
8PVA|1|A|C|286
8PVA|1|A|U|287
8PVA|1|A|A|288
8PVA|1|A|G|289
*
8PVA|1|A|C|311
8PVA|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17