J4_8PVA_002

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8PVA|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PVA_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0813

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8PVA|1|A|G|142
8PVA|1|A|A|143
8PVA|1|A|G|144
*
8PVA|1|A|C|178
8PVA|1|A|A|179
8PVA|1|A|U|180
8PVA|1|A|A|181
8PVA|1|A|A|182
8PVA|1|A|C|183
8PVA|1|A|G|184
*
8PVA|1|A|C|193
8PVA|1|A|C|194
8PVA|1|A|A|195
8PVA|1|A|A|196
8PVA|1|A|A|197
8PVA|1|A|G|198
*
8PVA|1|A|U|219
8PVA|1|A|G|220
8PVA|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20