J4_8PVA_006

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8PVA|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PVA_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1681

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8PVA|1|a|C|268
8PVA|1|a|C|269
*
8PVA|1|a|G|370
8PVA|1|a|A|371
8PVA|1|a|G|372
8PVA|1|a|U|373
8PVA|1|a|A|374
8PVA|1|a|G|375
*
8PVA|1|a|U|399
8PVA|1|a|G|400
8PVA|1|a|A|401
8PVA|1|a|A|402
8PVA|1|a|U|403
8PVA|1|a|A|404
8PVA|1|a|U|405
8PVA|1|a|G|406
*
8PVA|1|a|C|421
8PVA|1|a|A|422
8PVA|1|a|A|423
8PVA|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28