3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GG*UU*AC*GC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8Q4F_010 not in the Motif Atlas
Homologous match to J4_5J7L_024
Geometric discrepancy: 0.1278
The information below is about J4_5J7L_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_24280.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8Q4F|1|a|G|1444
8Q4F|1|a|G|1445
*
8Q4F|1|a|U|1466
8Q4F|1|a|U|1467
*
8Q4F|1|a|A|1525
8Q4F|1|a|C|1526
*
8Q4F|1|a|G|1546
8Q4F|1|a|C|1547

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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