J4_8Q4F_013

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Q4F_013 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1119

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8Q4F|1|a|G|2643
8Q4F|1|a|G|2644
8Q4F|1|a|G|2645
8Q4F|1|a|C|2646
*
8Q4F|1|a|G|2674
8Q4F|1|a|A|2675
8Q4F|1|a|C|2676
*
8Q4F|1|a|G|2731
8Q4F|1|a|G|2732
8Q4F|1|a|A|2733
8Q4F|1|a|A|2734
8Q4F|1|a|G|2735
*
8Q4F|1|a|U|2769
8Q4F|1|a|G|2770
8Q4F|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14