J4_8Q5I_004
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*AGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8Q5I|1|1|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Q5I_004 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0363
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Q5I|1|1|G|1488
8Q5I|1|1|G|1489
8Q5I|1|1|U|1490
8Q5I|1|1|U|1491
8Q5I|1|1|C|1492
*
8Q5I|1|1|G|1516
8Q5I|1|1|G|1517
8Q5I|1|1|U|1518
8Q5I|1|1|U|1519
8Q5I|1|1|A|1520
8Q5I|1|1|G|1521
*
8Q5I|1|1|C|1610
8Q5I|1|1|U|1611
*
8Q5I|1|1|A|1825
8Q5I|1|1|G|1826
8Q5I|1|1|U|1827
8Q5I|1|1|C|1828
8Q5I|1|1|G|1829
8Q5I|1|1|U|1830
8Q5I|1|1|A|1831
8Q5I|1|1|C|1832
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- 60S ribosomal protein L25
- Chain AH
- 60S ribosomal protein L34-B
- Chain AK
- 60S ribosomal protein L37-B
- Chain AL
- 60S ribosomal protein L38
- Chain AM
- 60S ribosomal protein L39
- Chain z
- 60S ribosomal protein L19-A
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