J4_8Q5I_007
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8Q5I|1|1|U|2247, 8Q5I|1|1|U|2292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Q5I_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.2026
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
8Q5I|1|1|C|2170
8Q5I|1|1|U|2171
8Q5I|1|1|G|2172
*
8Q5I|1|1|C|2226
8Q5I|1|1|G|2227
*
8Q5I|1|1|C|2245
8Q5I|1|1|U|2246
8Q5I|1|1|U|2247
8Q5I|1|1|A|2248
8Q5I|1|1|A|2249
8Q5I|1|1|G|2250
8Q5I|1|1|G|2251
8Q5I|1|1|U|2252
8Q5I|1|1|A|2253
8Q5I|1|1|G|2254
*
8Q5I|1|1|U|2288
8Q5I|1|1|G|2289
8Q5I|1|1|A|2290
8Q5I|1|1|A|2291
8Q5I|1|1|U|2292
8Q5I|1|1|G|2293
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 60S ribosomal protein L41
- Chain j
- 60S ribosomal protein L2-B
Coloring options: