J4_8Q5I_012

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

8Q5I|1|A|A|621, 8Q5I|1|A|A|1011, 8Q5I|1|A|C|1013, 8Q5I|1|A|U|1014, 8Q5I|1|A|A|1015, 8Q5I|1|A|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Q5I_012 not in the Motif Atlas

Homologous match to J4_8C3A_022

Geometric discrepancy: 0.0591

The information below is about J4_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8Q5I|1|A|A|620
8Q5I|1|A|A|621
8Q5I|1|A|G|622
*
8Q5I|1|A|C|960
8Q5I|1|A|G|961
8Q5I|1|A|A|962
8Q5I|1|A|A|963
8Q5I|1|A|A|964
8Q5I|1|A|G|965
*
8Q5I|1|A|C|1006
8Q5I|1|A|C|1007
8Q5I|1|A|A|1008
8Q5I|1|A|U|1009
8Q5I|1|A|A|1010
8Q5I|1|A|A|1011
8Q5I|1|A|A|1012
8Q5I|1|A|C|1013
8Q5I|1|A|U|1014
8Q5I|1|A|A|1015
8Q5I|1|A|U|1016
8Q5I|1|A|G|1017
*
8Q5I|1|A|U|1088
8Q5I|1|A|U|1089

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

60S ribosomal protein L41

Chain M

40S ribosomal protein S11A

Chain O

40S ribosomal protein S13

Chain P

40S ribosomal protein S14-A

Chain X

40S ribosomal protein S22-A

Chain Y

Ribosomal protein S23 (S12)

Chain b

40S ribosomal protein S26