J4_8QBT_003

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8QBT|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QBT_003 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0937

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8QBT|1|A|C|268
8QBT|1|A|C|269
*
8QBT|1|A|G|370
8QBT|1|A|A|371
8QBT|1|A|G|372
8QBT|1|A|U|373
8QBT|1|A|A|374
8QBT|1|A|G|375
*
8QBT|1|A|U|399
8QBT|1|A|G|400
8QBT|1|A|A|401
8QBT|1|A|A|402
8QBT|1|A|U|403
8QBT|1|A|A|404
8QBT|1|A|U|405
8QBT|1|A|G|406
*
8QBT|1|A|C|421
8QBT|1|A|A|422
8QBT|1|A|A|423
8QBT|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28