J4_8QBT_014

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8QBT|1|i|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QBT_014 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2636

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8QBT|1|i|G|115
8QBT|1|i|A|116
8QBT|1|i|G|117
8QBT|1|i|U|118
8QBT|1|i|A|119
8QBT|1|i|A|120
8QBT|1|i|U|121
8QBT|1|i|G|122
*
8QBT|1|i|U|239
8QBT|1|i|G|240
*
8QBT|1|i|C|286
8QBT|1|i|U|287
8QBT|1|i|A|288
8QBT|1|i|G|289
*
8QBT|1|i|C|311
8QBT|1|i|C|312

Current chains

Chain i

16S rRNA

Nearby chains

Chain y

Small ribosomal subunit protein uS17