J4_8QCQ_002
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGAAG*CGCC*GGA*UGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QCQ_002 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.1096
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QCQ|1|A|U|340
8QCQ|1|A|G|341
8QCQ|1|A|A|342
8QCQ|1|A|A|343
8QCQ|1|A|G|344
*
8QCQ|1|A|C|360
8QCQ|1|A|G|361
8QCQ|1|A|C|362
8QCQ|1|A|C|363
*
8QCQ|1|A|G|367
8QCQ|1|A|G|368
8QCQ|1|A|A|369
*
8QCQ|1|A|U|381
8QCQ|1|A|G|382
8QCQ|1|A|U|383
8QCQ|1|A|A|384
8QCQ|1|A|G|385
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein L24
Coloring options: