J4_8QCQ_009

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

8QCQ|1|A|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QCQ_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0602

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8QCQ|1|A|C|1862
8QCQ|1|A|U|1863
8QCQ|1|A|G|1864
*
8QCQ|1|A|C|1934
8QCQ|1|A|G|1935
*
8QCQ|1|A|C|1953
8QCQ|1|A|C|1954
8QCQ|1|A|U|1955
8QCQ|1|A|A|1956
8QCQ|1|A|A|1957
8QCQ|1|A|G|1958
8QCQ|1|A|G|1959
8QCQ|1|A|U|1960
8QCQ|1|A|A|1961
8QCQ|1|A|G|1962
*
8QCQ|1|A|C|1996
8QCQ|1|A|G|1997
8QCQ|1|A|A|1998
8QCQ|1|A|A|1999
8QCQ|1|A|A|2000
8QCQ|1|A|G|2001

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain w

Transfer RNA; tRNA