J4_8QCQ_014

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGAC*GAUGGUU*AUAAAAG*CACU

Length

22 nucleotides

Bulged bases

8QCQ|1|a|G|181, 8QCQ|1|a|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QCQ|1|a|A|140
8QCQ|1|a|G|141
8QCQ|1|a|A|142
8QCQ|1|a|C|143
*
8QCQ|1|a|G|177
8QCQ|1|a|A|178
8QCQ|1|a|U|179
8QCQ|1|a|G|180
8QCQ|1|a|G|181
8QCQ|1|a|U|182
8QCQ|1|a|U|183
*
8QCQ|1|a|A|206
8QCQ|1|a|U|207
8QCQ|1|a|A|208
8QCQ|1|a|A|209
8QCQ|1|a|A|210
8QCQ|1|a|A|211
8QCQ|1|a|G|212
*
8QCQ|1|a|C|227
8QCQ|1|a|A|228
8QCQ|1|a|C|229
8QCQ|1|a|U|230

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20