J4_8QFD_001
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 8QFD|1|5|C|304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QFD_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1265
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8QFD|1|5|C|106
8QFD|1|5|C|107
*
8QFD|1|5|G|273
8QFD|1|5|A|274
8QFD|1|5|G|275
8QFD|1|5|U|276
8QFD|1|5|C|277
8QFD|1|5|G|278
*
8QFD|1|5|C|299
8QFD|1|5|A|300
8QFD|1|5|A|301
8QFD|1|5|A|302
8QFD|1|5|G|303
8QFD|1|5|C|304
8QFD|1|5|G|305
*
8QFD|1|5|U|322
8QFD|1|5|A|323
8QFD|1|5|A|324
8QFD|1|5|G|325
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- 60S ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain i
- 60S ribosomal protein L36
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