J4_8QFD_002

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8QFD|1|5|A|2358, 8QFD|1|5|U|2361, 8QFD|1|5|U|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|C|2357
8QFD|1|5|A|2358
8QFD|1|5|A|2359
8QFD|1|5|A|2360
8QFD|1|5|U|2361
8QFD|1|5|A|2362
8QFD|1|5|U|2363
*
8QFD|1|5|A|2381
8QFD|1|5|G|2382
8QFD|1|5|G|2383
*
8QFD|1|5|C|2816
8QFD|1|5|A|2817
8QFD|1|5|U|2818
8QFD|1|5|G|2819
8QFD|1|5|U|2820
8QFD|1|5|U|2821
*
8QFD|1|5|A|3856
8QFD|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain d

60S ribosomal protein L31