J4_8QFD_010
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAA*UC*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 8QFD|1|5|U|4677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QFD|1|5|G|4587
8QFD|1|5|U|4588
8QFD|1|5|A|4589
8QFD|1|5|A|4590
*
8QFD|1|5|U|4620
8QFD|1|5|C|4621
*
8QFD|1|5|G|4676
8QFD|1|5|U|4677
8QFD|1|5|G|4678
*
8QFD|1|5|C|4712
8QFD|1|5|G|4713
8QFD|1|5|C|4714
8QFD|1|5|C|4715
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L13a
- Chain V
- 60S ribosomal protein L23
Coloring options: