J4_8QHC_001
3D structure
- PDB id
- 8QHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SidH from Legionella pneumophila in complex with LubX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGUG(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 8QHC|1|B|4SU|8, 8QHC|1|B|U|45, 8QHC|1|B|3AU|47, 8QHC|1|B|C|48
- QA status
- Modified nucleotides: 4SU, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QHC_001 not in the Motif Atlas
- Homologous match to J4_3WFS_001
- Geometric discrepancy: 0.5022
- The information below is about J4_3WFS_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.3
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QHC|1|B|A|7
8QHC|1|B|4SU|8
8QHC|1|B|A|9
8QHC|1|B|G|10
*
8QHC|1|B|C|25
8QHC|1|B|A|26
8QHC|1|B|G|27
*
8QHC|1|B|C|43
8QHC|1|B|G|44
8QHC|1|B|U|45
8QHC|1|B|G|46
8QHC|1|B|3AU|47
8QHC|1|B|C|48
8QHC|1|B|C|49
*
8QHC|1|B|G|65
8QHC|1|B|U|66
Current chains
- Chain B
- t-RNA
Nearby chains
- Chain A
- Protein SidH
- Chain C
- Elongation factor Tu
Coloring options: