J4_8QK7_001

3D structure

PDB id

8QK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UAA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8QK7|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QK7_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1538

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8QK7|1|1|C|268
8QK7|1|1|C|269
*
8QK7|1|1|G|370
8QK7|1|1|A|371
8QK7|1|1|G|372
8QK7|1|1|U|373
8QK7|1|1|A|374
8QK7|1|1|G|375
*
8QK7|1|1|U|399
8QK7|1|1|G|400
8QK7|1|1|A|401
8QK7|1|1|A|402
8QK7|1|1|U|403
8QK7|1|1|A|404
8QK7|1|1|U|405
8QK7|1|1|G|406
*
8QK7|1|1|C|421
8QK7|1|1|A|422
8QK7|1|1|A|423
8QK7|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein bL9

Chain X

50S ribosomal protein L28