3D structure

PDB id
8QOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SecM-stalled Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
8QOA|1|A|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8QOA_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.3378
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8QOA|1|A|G|115
8QOA|1|A|A|116
8QOA|1|A|G|117
8QOA|1|A|U|118
8QOA|1|A|A|119
8QOA|1|A|A|120
8QOA|1|A|U|121
8QOA|1|A|G|122
*
8QOA|1|A|U|239
8QOA|1|A|G|240
*
8QOA|1|A|C|286
8QOA|1|A|U|287
8QOA|1|A|A|288
8QOA|1|A|G|289
*
8QOA|1|A|C|311
8QOA|1|A|C|312

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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