J4_8QOA_002

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8QOA|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8QOA_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0712

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8QOA|1|A|G|142
8QOA|1|A|A|143
8QOA|1|A|G|144
*
8QOA|1|A|C|178
8QOA|1|A|A|179
8QOA|1|A|U|180
8QOA|1|A|A|181
8QOA|1|A|A|182
8QOA|1|A|C|183
8QOA|1|A|G|184
*
8QOA|1|A|C|193
8QOA|1|A|C|194
8QOA|1|A|A|195
8QOA|1|A|A|196
8QOA|1|A|A|197
8QOA|1|A|G|198
*
8QOA|1|A|U|219
8QOA|1|A|G|220
8QOA|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20