J4_8QOI_004

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8QOI|1|L5|A|2366, 8QOI|1|L5|U|2369, 8QOI|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|OMC|2365
8QOI|1|L5|A|2366
8QOI|1|L5|A|2367
8QOI|1|L5|A|2368
8QOI|1|L5|U|2369
8QOI|1|L5|A|2370
8QOI|1|L5|U|2371
*
8QOI|1|L5|A|2389
8QOI|1|L5|G|2390
8QOI|1|L5|G|2391
*
8QOI|1|L5|OMC|2824
8QOI|1|L5|A|2825
8QOI|1|L5|U|2826
8QOI|1|L5|G|2827
8QOI|1|L5|U|2828
8QOI|1|L5|U|2829
*
8QOI|1|L5|A|3856
8QOI|1|L5|G|3857

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31