J4_8QOI_012

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

8QOI|1|L5|U|4677

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|4587
8QOI|1|L5|U|4588
8QOI|1|L5|A|4589
8QOI|1|L5|A2M|4590
*
8QOI|1|L5|OMU|4620
8QOI|1|L5|C|4621
*
8QOI|1|L5|G|4676
8QOI|1|L5|U|4677
8QOI|1|L5|G|4678
*
8QOI|1|L5|C|4712
8QOI|1|L5|G|4713
8QOI|1|L5|C|4714
8QOI|1|L5|C|4715

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23