J4_8QRK_003
3D structure
- PDB id
- 8QRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.69 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 8QRK|1|A|A|942, 8QRK|1|A|A|1103, 8QRK|1|A|C|1106, 8QRK|1|A|C|1108
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QRK_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.2504
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8QRK|1|A|G|941
8QRK|1|A|A|942
8QRK|1|A|G|943
*
8QRK|1|A|C|1052
8QRK|1|A|A|1053
8QRK|1|A|A|1054
8QRK|1|A|U|1055
8QRK|1|A|A|1056
8QRK|1|A|G|1057
*
8QRK|1|A|C|1098
8QRK|1|A|C|1099
8QRK|1|A|C|1100
8QRK|1|A|U|1101
8QRK|1|A|A|1102
8QRK|1|A|A|1103
8QRK|1|A|A|1104
8QRK|1|A|C|1105
8QRK|1|A|C|1106
8QRK|1|A|U|1107
8QRK|1|A|C|1108
8QRK|1|A|A|1109
*
8QRK|1|A|U|1132
8QRK|1|A|C|1133
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 3
- Aurora kinase A-interacting protein
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain L
- 28S ribosomal protein S15, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
- Chain Q
- 28S ribosomal protein S21, mitochondrial
- Chain T
- 28S ribosomal protein S25, mitochondrial
Coloring options: