J4_8QU5_002
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- UAAGCCUGCG*CAAUUAAC*GUCAACC*GCA
- Length
- 28 nucleotides
- Bulged bases
- 8QU5|1|A|U|2372, 8QU5|1|A|A|2374
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QU5|1|A|U|2336
8QU5|1|A|A|2337
8QU5|1|A|A|2338
8QU5|1|A|G|2339
8QU5|1|A|C|2340
8QU5|1|A|C|2341
8QU5|1|A|U|2342
8QU5|1|A|G|2343
8QU5|1|A|C|2344
8QU5|1|A|G|2345
*
8QU5|1|A|C|2368
8QU5|1|A|A|2369
8QU5|1|A|A|2370
8QU5|1|A|U|2371
8QU5|1|A|U|2372
8QU5|1|A|A|2373
8QU5|1|A|A|2374
8QU5|1|A|C|2375
*
8QU5|1|A|G|2421
8QU5|1|A|U|2422
8QU5|1|A|C|2423
8QU5|1|A|A|2424
8QU5|1|A|A|2425
8QU5|1|A|C|2426
8QU5|1|A|C|2427
*
8QU5|1|A|G|2436
8QU5|1|A|C|2437
8QU5|1|A|A|2438
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain 9
- 39S ribosomal protein L41, mitochondrial
- Chain U
- 39S ribosomal protein L23, mitochondrial
- Chain Y
- 39S ribosomal protein L47, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
- Chain s
- 39S ribosomal protein S30, mitochondrial
Coloring options: