J4_8QYX_003

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8QYX|1|A2|G|1271, 8QYX|1|A2|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|C|981
8QYX|1|A2|U|982
8QYX|1|A2|C|983
*
8QYX|1|A2|G|1070
8QYX|1|A2|C|1071
8QYX|1|A2|C|1072
*
8QYX|1|A2|G|1240
8QYX|1|A2|C|1241
8QYX|1|A2|G|1242
8QYX|1|A2|C|1243
*
8QYX|1|A2|G|1268
8QYX|1|A2|G|1269
8QYX|1|A2|A|1270
8QYX|1|A2|G|1271
8QYX|1|A2|C|1272
8QYX|1|A2|G|1273

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain H2

60S ribosomal protein L6

Chain V1

60S ribosomal protein L29