3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
UC*GGUCAG*UC*GGCCGUA
Length
17 nucleotides
Bulged bases
8QYX|1|A2|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8QYX|1|A2|U|2409
8QYX|1|A2|C|2410
*
8QYX|1|A2|G|2434
8QYX|1|A2|G|2435
8QYX|1|A2|U|2436
8QYX|1|A2|C|2437
8QYX|1|A2|A|2438
8QYX|1|A2|G|2439
*
8QYX|1|A2|U|2538
8QYX|1|A2|C|2539
*
8QYX|1|A2|G|2777
8QYX|1|A2|G|2778
8QYX|1|A2|C|2779
8QYX|1|A2|C|2780
8QYX|1|A2|G|2781
8QYX|1|A2|U|2782
8QYX|1|A2|A|2783

Current chains

Chain A2
28S rRNA

Nearby chains

Chain C2
5.8S ribosomal RNA; 5.8S rRNA
Chain L1
60S ribosomal protein L19
Chain R1
60S ribosomal protein L23a
Chain a1
60S ribosomal protein L34
Chain b1
60S ribosomal protein L35
Chain e1
60S ribosomal protein L38
Chain f1
60S ribosomal protein L39

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