J4_8QYX_012
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8QYX|1|A2|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QYX_012 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1687
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QYX|1|A2|C|4231
8QYX|1|A2|U|4232
8QYX|1|A2|A|4233
8QYX|1|A2|A|4234
8QYX|1|A2|G|4235
*
8QYX|1|A2|U|4289
8QYX|1|A2|U|4290
8QYX|1|A2|G|4291
8QYX|1|A2|A|4292
8QYX|1|A2|PSU|4293
*
8QYX|1|A2|A|4317
8QYX|1|A2|C|4318
8QYX|1|A2|C|4319
*
8QYX|1|A2|G|4328
8QYX|1|A2|G|4329
8QYX|1|A2|G|4330
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain G2
- 60S ribosomal protein L5
- Chain N1
- 60S ribosomal protein L21
- Chain V1
- 60S ribosomal protein L29
- Chain i1
- 60S ribosomal protein L36a
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